Anne-Marie Koop

2 57 Proc Natl Acad Sci U S A 2005; 102 :15545–15550. 13. Huang DW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009;4:44–57. 14. Huang DW, Sherman BT, Lempicki RA. Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids R es 2009;37:1–13. SUPPLEMENTAL FIGURES Supplemental figure 1 . Significantly regulated genes in PAB- and PAB+CF. Analysis of gene expression. Number of differentially expressed genes vs. CON in PAB- (blue) and PAB+CF (red) is indicated in the circles. Commonly regulated genes in purple. Number of significantly related biological processes (DAVID) between brackets. Pie-chart shows distribution of the related biological processes in categories for PAB+CF and COMMON. N=7/4/5 for CON/PAB-/PAB+CF. Individual genes: Limma P controlled with false discovery rate <1% was considered significant. DAVID: P<0.01 and Benjamini <0.01 was considered significant.