Fig. 2 Core genome MLST analysis based on 2513 loci of E. coli isolates from patients positive at admission and discharge, and of E. coli isolates acquired during hospitalization. Node numbers represent isolate numbers and line numbers show the number of different alleles between the isolates. A cut-off value of >10 alleles difference (embedded in the SeqSphere software) was applied to consider strains to be different. Colors match the sequence types (ST). A: Admission, D: Discharge and Ac: Acquired 36 Chapter 2.1
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