Consent for publication Not applicable Competing interests AV, AS, KM, NS, CK, MC, and JS declare that they have no competing interests. JS and CK recently collaborated with employees of bioMérieux on a research project that included whole-genome sequencing of bacterial isolates, which was performed by the company. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results This work was presented at the FIS/HIS international 2020 online (poster presentation, theme antimicrobial resistance, paper number 119). 66 Chapter 2.2
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