Supplemental file 4. Distribution of selected antimicrobial resistance genes among the E. coli isolates. Isolates from patients are clustered based on similarities of presence and absence of the antimicrobial resistance genes. Blue represents a perfect hit to the reference sequence in the CARD database, teal represents a strict hit, and blank indicates absence of that gene in the isolate (8). Patient 9 was included twice in the study. ESBL-positive E. coli were cultured on both admissions (9a and 9b). 74 Chapter 2.2
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