106 Chapter 6 Table 3. Median and range of SNP differences in pairwise comparisons per EPI link SNP differences n of pairwise comparisons Median Range Same sample(i) 2 1 1 Same flock, different sample(ii) 10 0.5 0-2 Same location, different ward/flock(iii) 25 1 0-3 Same domain, different location(iv) 9 5 0-8 Different domain(v) 45 4 1-9 Figure 2. GView alignment of the various plasmid sequences. Each arrow represents a coding sequence and not necessarily transcriptional direction; gene names are depicted as generated by prokka.
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