Table S1. Continued. Isolate no Sequencer Number of Reads, n Number of Matched Reads, n Average Length of Reads (base count), n Average Length of Reads (base count), n Percentage reads matched, % N50 (base count), n Number of Scaffolds, n Maximum Scaffold Length (base count), n Total scaffolds base counts, n Average Coverage (mean depth), n Average Coverage Matched Reads, n Percentage of expected min ref genome size, % Percentage of expected max ref genome size, % 13 MiSeq 1834592 1803247 165.65 166.44 98.29 177308 65 560195 5155241 58.95 58.22 113.08 98.35 14 MiSeq 1726652 1703412 219.40 221.06 98.65 400896 44 750637 4957492 76.42 75.96 108.74 94.57 15 MiSeq 1871506 1777645 184.39 190.94 94.98 119136 113 435121 5014037 68.82 67.69 109.98 95.65 16 HiSeq 2957635 2490566 95.10 96.12 84.21 123659 97 298455 5172753 54.38 46.28 113.46 98.68 17 HiSeq 4113007 3420987 95.76 96.50 83.17 138852 100 339284 5213313 75.55 63.32 114.35 99.45 18 MiSeq 2074454 2033574 166.78 168.33 98.03 229582 63 407247 5224271 66.23 65.52 114.59 99.66 19 HiSeq 3917452 3239752 95.41 96.22 82.70 292536 58 727187 5078058 73.60 61.39 111.39 96.87 20 HiSeq 3079895 2608397 95.73 96.52 84.69 139841 109 323752 4994505 59.03 50.41 109.55 95.28 8
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