Chapter 3 100 DEGs list altName nodeAttr Function annotation from database TAIR_ID Short description_ (30-06-2021) Curator_summary_(30-06-2021) Solyc04g007430 AT1G09530 phytochrome interacting factor 3 Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the diurnal clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes. Solyc06g062460 yellow AT3G21330 basic helix-loophelix (bHLH) DNAbinding superfamily protein - Solyc07g008010 R2R3MYB transcription factor 82 grey Trichome differentiation AT5G52600 myb domain protein 82 Encodes a nuclear-localized transcription activator that is a member of the R2R3 factor gene family. MYB82 and GL1 can form homodimers and heterodimers at R2R3-MYB domains. At least one of the two introns in MYB82 is essential to the protein?s trichome developmental function. Solyc07g056360 turquoise AT2G42870 phy rapidly regulated 1 Encodes PHYTOCHROME RAPIDLY REGULATED1 (PAR1), an atypical basic helixloop-helix (bHLP) protein. Closely related to PAR2 (At3g58850). Up regulated after simulated shade perception. Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response. Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510).
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