Exploring conservation of cellular-level traits in shade avoidance syndrome among species 5 187 Internode 6h Pith 6h Internode 24h Pith 24h Tomato Eggplant Pepper 2 Arabidopsis Mustard Pea 1 Soybean Pea 2 Pea 3 Pepper 1 -3 -2 -1 0 -log10(FC) Figure 5.11. Phylogeny and gene expression patterns of Solyc01g090760 homologs. Genes are: Tomato: Solyc01g090760, Pepper1: chr3:267174801-267176100 (CA00g71840:1-921), Pepper2: chr8:35902201-35904000, Eggplant: chr8:35902201-35904000, Arabidopsis: AT2G45050, Mustard: BniB07g039570.2N.1, Soybean: GlysoPI483463.06G078800.1, Pea1: XM_051027377, Pea2: XM_051030552.1, Pea3: XM_051038772.1. On the left: phylogenetic relationship by maximum likelihood, constructed by software Mega X, using a Tamura Nei model generating the ML tree. Bootstrap analysis (1000 replicates) enhances reliability, with values above each branch reflecting robust bootstrap support. On the right: expression heatmap demonstrating log fold change from qPCR for WL+FR vs. WL expression in internode or pith at 6h and 24h FR treatment. Red signifies upregulation in WL+FR, blue denotes downregulation, while a baseline of white is established when logFC=0.
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