Chapter 5 188 Internode 6h Pith 6h Internode 24h Pith 24h Soybean 2 Soybean 1 Pea 3 Arabidopsis 1 Mustard Arabidopsis 2 Eggplant Pepper Tomato Pea 1 Pea 2 -log10(FC) -2 -1 0 1 Figure 5.12. Phylogeny and gene expression patterns of Solyc08g080150 homologs. Genes are Tomato: Solyc08g080150, Pepper: TCP19, Eggplant: chr8:85852001-85853900, Arabidopsis1: AT2G45680, Arabidopsis2: AT5G51910, Mustard: BniB08g029800.2N.1, Soybean1: Glyma.07G080300.1, Soybean2: Glyma07g08710.2, Pea1: XM_051030490.1, Pea2: XM_051030491.1. On the left: phylogenetic relationship by maximum likelihood, constructed by software Mega X, using a Tamura Nei model generating the ML tree. Bootstrap analysis (1000 replicates) enhances reliability, with values above each branch reflecting robust bootstrap support. On the right: expression heatmap demonstrating log fold change from qPCR for WL+FR vs. WL expression in internode or pith at 6h and 24h FR treatment. Red signifies upregulation in WL+FR, blue denotes downregulation, while a baseline of white is established when logFC=0.
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