Chapter 3 68 binding molecular response could also be indicated by the other GO categories, such as the protein dimerization activity, which includes enzyme activation that can be involved in DNA binding activities (Dang, 2022). Thus, looking into transcription factors in the DEGs will be interesting for our following analysis. Pith specific FR 30h Pith specific FR 48h Pith specific WL 30h transmembrane transport cation transmembrane transporter activity cation transport membrane transmembrane transporter activity trehalose metabolic process alpha-alpha-trehalase activity cellulose biosynthetic process cellulose synthase (UDP-forming) activity steroid biosynthetic process methyltransferase activity inositol catabolic process inositol oxygenase activity hexosyltransferase activity nucleocytoplasmic transport lipid glycosylation glycerol-3-phosphate catabolic process mitochondrial pyruvate transmembrane transport glutathione catabolic process gamma-glutamylcyclotransferase activity protein dimerization activity defense response heme binding channel activity transaminase activity cell wall modification pectinesterase activity oxidoreductase activity- acting on paired donors- with incorporation or reduction of molecular oxygen intramolecular lyase activity lipid binding iron ion binding lipid biosynthetic process oxidoreductase activity- acting on the aldehyde or oxo group of donors disulfide as acceptor oxidoreductase activity- acting on CH-OH group of donors strictosidine synthase activity acyltransferase activity- transferring groups other than amino-acyl groups fatty acid biosynthetic process serine-type endopeptidase inhibitor activity membrane catalytic activity hydrolase activity- acting on ester bonds chitin catabolic process cell wall macromolecule catabolic process chitinase activity Tissue and treated hours -log(q value) Up DEGs Down DEGs -5 0 5 10 Figure 3.9. GO enrichment analysis of pith-specific DEGs (pith compared to whole internode). Heatmap of the -log of adjusted p-values (q-value) for each enriched GO category. Red color scheme for upregulated DEGs, and blue for downregulated.
RkJQdWJsaXNoZXIy MTk4NDMw