Chapter 3 70 In-WL In-FR Pith-WL Pith-FR channel activity chlorophyllide a oxygenase [overall] activity oxidoreductase activity transmembrane transport catalytic activity response to auxin photosystem II iron-sulfur cluster binding oxidoreductase activity acting on the aldehyde or oxo group of donorsNAD or NADP as acceptor photosystem II oxygen evolving complex tetrahydrobiopterin biosynthetic process 4-alpha-hydroxytetrahydrobiopterin dehydratase activity photosynthesis polysaccharide catabolic process beta-amylase activity membrane sodium ion transport transporter activity fructose-bisphosphate aldolase activity glycolytic process oxidoreductase activity acting on NAD(P)Hquinone or similar compound as acceptor unfolded protein binding ATP synthesis coupled proton transport oxidoreductase activity acting on CH-OH group of donors cysteine biosynthetic process from serine serine O-acetyltransferase activity NADP binding triose-phosphate isomerase activity carbonate dehydratase activity S-adenosylmethionine biosynthetic process methionine adenosyltransferase activity L-phenylalanine biosynthetic process prephenate dehydratase activity inositol biosynthetic process inositol-3-phosphate synthase activity regulation of cyclin-dependent protein serine/threonine kinase activity protein kinase binding proton-transporting ATP synthase complex-coupling factor F(o) hydrolase activity acting on ester bonds xenobiotic transmembrane transport antiporter activity 2 iron 2 sulfur cluster binding copper ion binding extrinsic component of membrane monolayer-surrounded lipid storage body cytochrome b6f complex proton-transporting ATP synthase activity rotational mechanism intracellular membrane-bounded organelle glutathione peroxidase activity phosphate-containing compound metabolic process DNA replication initiation plasma membrane phosphoenolpyruvate carboxylase activity oxidoreductase activity acting on the CH-OH group of donorsNAD or NADP as acceptor intramolecular lyase activity protein catabolic process sulfate transport sulfate transmembrane transporter activity carbon fixation mitochondrial intermembrane space copper ion transport copper chaperone activity dynein complex microtubule-based process phospholipid biosynthetic process iron-sulfur cluster assembly acyltransferase activitytransferring groups other than amino-acyl groups nitrite reductase [NAD(P)H] activity oxidoreductase activityacting on the CH-CH group of donors phosphate ion transport inorganic phosphate transmembrane transporter activity glycine catabolic process glycine dehydrogenase (decarboxylating) activity lipid biosynthetic process tyrosine biosynthetic process prephenate dehydrogenase (NADP+) activity prephenate dehydrogenase (NAD+) activity cysteine-type peptidase activity folic acid-containing compound metabolic process dihydroneopterin aldolase activity translational termination translation release factor activity kinase activity single-stranded DNA binding microtubule-based movement microtubule motor activity histone acetyltransferase activity primary metabolic process hydrolase activity hydrolyzing O-glycosyl compounds chlorophyll catabolic process chlorophyllase activity racemase activityacting on amino acids and derivatives microtubule binding thiamine biosynthetic process cell adhesion regulation of transcription DNA-templated 4-hydroxy-tetrahydrodipicolinate reductase nuclease activity cellulose biosynthetic process cellulose synthase (UDP-forming) activity glutathione catabolic process gamma-glutamylcyclotransferase activity carbohydrate metabolic process enzyme inhibitor activity hydrolase activity methylenetetrahydrofolate dehydrogenase (NADP+) activity chitin catabolic process cell wall macromolecule catabolic process chitinase activity serine-type peptidase activity lipid metabolic process proteolysis calmodulin binding mitochondrial matrix tRNA-intron endonuclease activity multicellular organism development protein dimerization activity Golgi stack oligosaccharide biosynthetic process alpha-1 6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity transmembrane transporter activity DNA-directed 5'-3' RNA polymerase activity RNA-directed 5'-3' RNA polymerase activity Tissue and treatment -log(q value) 0 2 4 6 Figure 3.10. Gene ontology enrichment analysis of DEGs in pith or whole internode comparing morning timepoints to afternoon timepoints. Heatmap of the -log of adjusted p-values (q-values) for each enriched GO category. Red color scheme for upregulated DEG.
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