Transcriptome changes of tomato internode elongation induced by far-red light 3 97 Table S3.2. DEGs from DEG analysis which are transcriptome factor. Functional annotations were obtained from Plant Transcription Factor Database (Jin et al., 2015; Jin et al., 2017), Solgenomics network (Fernandez-Pozo et al., 2015) and literature (Yang et al., 2015; Padmanabhan et al., 2022). Homologs from Arabidopsis were identified by multi-blast using Arabidopsis protein sequences. Red color indicates pith specific regulators. DEGs list altName nodeAttr Function annotation from database TAIR_ID Short description_ (30-06-2021) Curator_summary_(30-06-2021) Solyc04g007000 AP2/B3 transcription factor family protein pink Ethylene-responsive transcription factor4 AT1G13260 related to ABI3/ VP1 1 Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has diurnal regulation and may function as a negative growth regulator. The mRNA is cellto-cell mobile. Solyc07g005400 bHLH transcription factor 050 yellow Regulation of cell size AT2G24260 LJRHL1-like 1 Encodes a basic helix-loop-helix (bHLH) protein that regulates root hair and sperm cell development. One of the three Arabidopsis homologs of the Lotus japonicus ROOTHAIRLESS1 (LjRHL1) gene: At2g24260 (AtLRL1), At4g30980 (AtLRL2), and At5g58010 (AtLRL3). Solyc08g080150 TCP transcription factor 20 grey Regulation of cell size AT2G43060 TCP family transcription factor - Solyc01g090760 GATA transcription factor blue AT2G45050 GATA transcription factor 2 Encodes a member of the GATA factor family of zinc finger transcription factors. A positive regulator of photomorphogenesis. Solyc04g077780 LIM domaincontaining protein brown AT1G10200 GATA type zinc finger transcription factor family protein Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization. Solyc10g079070 bHLH transcription factor 065 darkolivegreen AT3G57800 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Together with bHLH48 associates with phytochrome interacting factor 7 to regulate hypocotyl elongation. Solyc07g053450 Basic-leucine zipper (BZIP) transcription factor family protein turquoise Leaf cell number and cell size AT2G42380 Basic-leucine zipper (bZIP) transcription factor family protein Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.
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