134 Chapter 4 Supplementary table 2. Collagen morphology-specific upregulation of protein expression. 142 proteins were differentially expressed by macrophages cultured on fibrous collagen type I-coated tissue culture plastic compared to macrophages in globular collagen-coated conditions. Statistically tested with a paired Wilcoxon test. p<0.05 was considered significant. Gene name Protein name Fold change F/G p-value Serpinf1 Pigment epithelium-derived factor 12.66 3.13E-02 Dctn4 Dynactin subunit 4 9.97 3.13E-02 Rbm42 RNA-binding protein 42 9.86 3.13E-02 Mrps15 28S ribosomal protein S15, mitochondrial 9.52 3.13E-02 Atp7a Copper-transporting ATPase 1 6.11 3.13E-02 Ppic Peptidyl-prolyl cis-trans isomerase C 4.97 3.13E-02 Prim2 DNA primase large subunit 3.83 3.13E-02 Trim23 E3 ubiquitin-protein ligase TRIM23 3.64 3.13E-02 Mmp8 Neutrophil collagenase 3.63 3.13E-02 Uba5 Ubiquitin-like modifier-activating enzyme 5 3.40 3.13E-02 Plekha2 Pleckstrin homology domain-containing family A member 2 3.12 3.13E-02 Tmsb4x Thymosin beta-4 3.09 3.13E-02 Unc45a Protein unc-45 homolog A 2.61 3.13E-02 Ercc4 DNA repair endonuclease XPF 2.51 3.13E-02 Retreg3 Reticulophagy regulator 3 2.41 3.13E-02 Cybc1 Cytochrome b-245 chaperone 1 2.25 3.13E-02 Yipf4 Protein YIPF4 2.24 3.13E-02 Gdi1 Rab GDP dissociation inhibitor alpha 2.12 3.13E-02 Rdh11 Retinol dehydrogenase 11 2.11 3.13E-02 Rab11b Ras-related protein Rab-11B 2.10 3.13E-02 Rtn3 Reticulon-3 2.05 3.13E-02 Wtap Pre-mRNA-splicing regulator WTAP 2.05 3.13E-02 Apoo MICOS complex subunit Mic26 2.02 3.13E-02 Pgam5 Serine/threonine-protein phosphatase PGAM5, mitochondrial 2.00 3.13E-02 Gltp Glycolipid transfer protein 1.97 3.13E-02 Pdhx Pyruvate dehydrogenase protein X component, mitochondrial 1.92 3.13E-02 Fam177a1 Protein FAM177A1 1.91 3.13E-02 Crebbp Histone lysine acetyltransferase CREBBP 1.90 3.13E-02 Abcf3 ATP-binding cassette sub-family F member 3 1.90 3.13E-02 Bod1l Biorientation of chromosomes in cell division protein 1-like 1 1.85 3.13E-02 Efl1 Elongation factor-like GTPase 1 1.77 3.13E-02 Ftl1 Ferritin light chain 1 1.76 3.13E-02 C1qbp Complement component 1 Q subcomponentbinding protein, mitochondrial 1.76 3.13E-02 Ero1a ERO1-like protein alpha 1.75 3.13E-02 Tyms Thymidylate synthase 1.75 3.13E-02 Iqgap2 Ras GTPase-activating-like protein IQGAP2 1.74 3.13E-02 Sdf2l1 Stromal cell-derived factor 2-like protein 1 1.74 3.13E-02 Sel1l Protein sel-1 homolog 1 1.74 3.13E-02 Sar1b GTP-binding protein SAR1b 1.72 3.13E-02
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