93 3 Responses of alveolar-like macrophages to lysine deacetylase inhibition Protein Corrected p value Fold change MS275+LPS vs LPS Median LPS (Log2 Intensity) Median MS275+LPS (Log2 Intensity) Carbonic anhydrase 4 0.004 1.91 20.64 21.79 ATP-dependent zinc metalloprotease YME1L1 0.005 1.9 15.28 16.39 Misshapen-like kinase 1 0.012 1.89 17.26 18.31 Protein transport protein Sec61 subunit beta 0.032 1.86 17.04 17.86 Nuclear pore membrane glycoprotein 210 0.007 1.84 15.87 16.83 Melanoma inhibitory activity protein 2 0.039 1.82 12.9 13.87 Myeloid leukemia factor 2 0.031 1.82 16.12 16.8 Dehydrogenase/reductase SDR family member 1 0.04 1.82 17.15 18.07 Conserved oligomeric Golgi complex subunit 2 0.034 1.81 12.94 13.88 Adhesion G protein-coupled receptor L2 0.032 1.8 14.59 15.37 Disintegrin and metalloproteinase domain-containing protein 10 0.012 1.79 14.56 15.27 Ras-related protein Rab-8B 0.03 1.78 15.76 16.35 Ubiquitin-conjugating enzyme E2 J1 0.021 1.78 15.31 16.04 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial 0.047 1.76 16.01 17.34 Serine/threonine-protein kinase Nek4 0.045 1.76 12.04 13.42 Vesicle-associated membrane protein 4 0.000525 1.75 14.77 15.68 MAP kinase-activated protein kinase 2 0.001 1.75 16.54 17.14 Tyrosine-protein kinase ABL2 0.037 1.75 14.07 14.5 Sentrin-specific protease 3 0.019 1.75 13.51 14.74 Unconventional myosin-Ie 0.046 1.74 16.12 17.37 Kinesin-like protein KIF1B 0.017 1.74 15.4 16.35 Complex I assembly factor ACAD9, mitochondrial 0.021 1.74 15.81 16.52 Mitochondrial proton/calcium exchanger protein 0.001 1.73 16.55 17.29 Prenylcysteine oxidase 0.008 1.72 16.19 17.38 Brain-specific angiogenesis inhibitor 1-associated protein 2 0.049 1.71 13.87 14.78 Nardilysin 0.02 1.7 14.56 15.33 Dolichyldiphosphooligosaccharide- -protein glycosyltransferase subunit 1 0.037 1.68 18.81 19.42 Proteolipid protein 2 0.049 1.68 18.17 18.51 Long-chain-fatty-acid--CoA ligase 4 0.048 1.66 15.23 15.86
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