95 3 Responses of alveolar-like macrophages to lysine deacetylase inhibition Protein Corrected p value Fold change MS275+LPS vs LPS Median LPS (Log2 Intensity) Median MS275+LPS (Log2 Intensity) Transcription elongation factor 1 homolog 0.034 0.4 14.72 13.06 Probable RNA-binding protein EIF1AD 0.019 0.4 14.04 13.22 Sorting nexin-15 0.028 0.4 15.2 14.22 LIM and senescent cell antigenlike-containing domain protein 1 0.05 0.4 16.22 15.16 Eukaryotic translation initiation factor 3 subunit J-A;Eukaryotic translation initiation factor 3 subunit J-B 0.044 0.41 19.92 18.11 Desumoylating isopeptidase 1 0.047 0.42 17.66 16.62 Keratin, type I cytoskeletal 42 0.007 0.44 16.71 15.74 Protein SSXT 0.04 0.47 17.1 16.15 1,2-dihydroxy-3-keto-5methylthiopentene dioxygenase 0.006 0.47 16.26 14.94 S-phase kinase-associated protein 1 0.031 0.47 17.94 16.76 Protein LTV1 homolog 0.004 0.49 16.97 15.87 Mediator of RNA polymerase II transcription subunit 4 0.049 0.49 14.5 13.4 Protein Spindly 0.041 0.5 15.82 14.94 Uncharacterized protein C7orf50 homolog 0.047 0.5 15.29 14.76 Coagulation factor X 0.00022 0.51 15.73 14.66 G-protein-signaling modulator 3 0.033 0.51 16.23 15.32 Centrosomal protein of 55 kDa 0.016 0.51 16.06 14.67 Intraflagellar transport protein 22 homolog 0.045 0.52 15.64 14.32 Filamin A-interacting protein 1-like 0.007 0.53 13.75 13.05 Protein LZIC 0.019 0.53 17.39 16.68 Sperm-associated antigen 7 0.006 0.54 15.89 14.99 UV excision repair protein RAD23 homolog B 0.009 0.55 19.02 18.25 Tyrosine-protein phosphatase non-receptor type 18 0.021 0.55 17.52 16.57 Zinc finger CCCH domaincontaining protein 14 0.038 0.55 15.97 14.63 Probable cytosolic iron-sulfur protein assembly protein CIAO1 0.026 0.55 16.51 15.76 SAP30-binding protein 0.011 0.56 16.71 15.55 ETS-related transcription factor Elf-1 0.038 0.56 15.65 14.22 Coiled-coil domain-containing protein 50 0.01 0.56 16.16 15.61 U3 small nucleolar RNAassociated protein 15 homolog 0.045 0.56 15.92 15.13 Bromodomain-containing protein 7 0.021 0.57 15.11 14.53
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