115 Unraveling nitrogen, sulfur and carbon microbial bioreactor responses to stress Figure 2. Up-to-date bacterial core gene (UBCG) tree of 92 concatenated genes extracted from high and medium quality MAGs in this study. Genome completeness (in yellow) and contamination (in purple) values in percent are indicated to the right. MAGs in bold were selected from detailed characterization due to large shifts in abundance across experiments. Two of the Planctomycetota MAGs were classified by GTDB-Tk as the anammox bacteria “Ca. Kuenenia stuttgartiensis” (MAG 32) and “Ca. Scalindua rubra” (MAG 55). The one Nitrospirota MAG 39 was “Ca. Nitrobium versatile”, which we further characterized in this study. The two MAGs affiliated to Methylomirabilota were classified by GTDB-Tk as “Ca. Methylomirabilis oxyfera” (MAG 37) and “Ca. Methylomirabilis sp002634395” (MAG 38). However, phylogenetic and average amino acid identity (AAI) analyses revealed that the first MAG represented a 4
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